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publications
Understanding the dependence on the pulling speed of the unfolding pathway of proteins
Published in Journal of Statistical Mechanics: Theory and Experiment, 2015
In this paper, a model for predicting the unfolding pathway of modular proteins is studied.
Recommended citation: C. A. Plata, F. Cecconi, M. Chinappi, and A. Prados, Understanding the dependence on the pulling speed of the unfolding pathway of proteins, J. Stat. Mech. 2015 P08003 http://iopscience.iop.org/article/10.1088/1742-5468/2015/08/P08003/meta
Comment on Critique and correction of the currently accepted solution of the infinite spherical well in quantum mechanics by Huang Young-Sea and Thomann Hans-Rudolph
Published in Europhysics Letters, 2016
In this comment, we look into the problem of the infinite spherical well hilighting the well-defined traditional solutions.
Recommended citation: A. Prados and C. A. Plata, Comment on Critique and correction of the currently accepted solution of the infinite spherical well in quantum mechanics by Huang Young-Sea and Thomann Hans-Rudolph", EPL 116, 60011 (2016) http://iopscience.iop.org/article/10.1209/0295-5075/116/60011/meta
Lattice Models for Granular-Like Velocity Fields: Hydrodynamic Description
Published in Journal of Statistical Physics, 2016
In this paper, a simple lattice model useful in the context of shear modes in granular gases is put forward and analyzed.
Recommended citation: A. Manacorda, C. A. Plata, A. Lasanta, A. Puglisi, and A. Prados, Lattice Models for Granular-Like Velocity Fields: Hydrodynamic Description, J. Stat. Phys. 164, 810-841 (2016) https://link.springer.com/article/10.1007/s10955-016-1575-z
Lattice models for granular-like velocity fields: Finite-size effects
Published in Journal of Statistical Mechanics: Theory and Experiments, 2016
In this paper, we perform a deeper study of the size effects of our simple lattice granular model.
Recommended citation: C. A. Plata, A. Manacorda, A. Lasanta, A. Puglisi, and A. Prados, Lattice models for granular-like velocity fields: finite-size effects, J. Stat. Mech. 2016, 093203 http://iopscience.iop.org/article/10.1088/1742-5468/2016/09/093203/meta
Global stability and H-theorem in lattice models with nonconservative interactions
Published in Physical Review E, 2017
Herein, the stability of our simple model of granular gas is deeply analyzed, deriving an H-theorem.
Recommended citation: C. A. Plata and A. Prados, Global stability and H-theorem in lattice models with nonconservative interactions, Phys. Rev. E 95, 052121 (2017) https://journals.aps.org/pre/abstract/10.1103/PhysRevE.95.052121
Kovacs-Like Memory Effect in Athermal Systems: Linear Response Analysis
Published in Entropy, 2017
This study provides a quite general framework in order to analyze Kovacs-like memory effects in athermal systems in the linear response regime.
Recommended citation: C. A. Plata and A. Prados, Kovacs-Like Memory Effect in Athermal Systems: Linear Response Analysis, Entropy 19, 539 (2017) https://www.mdpi.com/1099-4300/19/10/539
Relevance of the Speed and Direction of Pulling in Simple Modular Proteins
Published in Journal of Chemical Theory and Computation, 2018
Steered molecular dynamics of a really simple construct helps us to discuss the validity of our simple model for predicting the unfolding pathway of proteins.
Recommended citation: C. A. Plata, Z. N. Scholl, P. E. Marszalek and A. Prados, Relevance of the Speed and Direction of Pulling in Simple Modular Proteins, J. Chem. Theory Comput. 14, 2910 (2018) https://pubs.acs.org/doi/abs/10.1021/acs.jctc.8b00347
Modelling the Unfolding Pathway of Biomolecules: Theoretical Approach and Experimental Prospect
Published in Coupled Mathematical Models for Physical and Nanoscale Systems and their Applications, 2018
We give a more sophisticated version of our model for predicting the unfolding pathway in proteins showing its theoretical robustness and providing some experimental prospects.
Recommended citation: C. A. Plata and A. Prados, Modelling the Unfolding Pathway of Biomolecules: Theoretical Approach and Experimental Prospect. In Luis L. Bonilla, Efthimios Kaxiras, and Roderick Melnik (editors),Workshop on Coupled Mathematical Models for Physical and Biological Nanoscale Systems and Their Applications (Springer International Publishing, 2018). https://link.springer.com/chapter/10.1007/978-3-319-76599-0_8